Install varscan by entering the following commands in the terminal:
sudo apt update sudo apt install varscan
Description:
variant detection in next-generation sequencing data
Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes.
Homepage: https://dkoboldt.github.io/varscan/
Version: 2.4.3+dfsg-1
Section: multiverse/science