Install ssw-align by entering the following commands in the terminal:
sudo apt update sudo apt install ssw-align
Description:
Smith-Waterman aligner based on libssw
This package provides a command-line aligner based on the libssw library, a fast SIMD accelerated implementation of the Smith-Waterman algorithm. The input files can be in FASTA or FASTQ format. Both target and query files can contain multiple sequences. Each sequence in the query file will be aligned with all sequences in the target file. Output is provided in SAM or BLAST-like text format.
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Version: 1.1-1
Section: universe/science