Install sspace by entering the following commands in the terminal:
sudo apt update sudo apt install sspace
Description:
scaffolding pre-assembled contigs after extension
SSAKE-based Scaffolding of Pre-Assembled Contigs after Extension (SSPACE) is a script able to extend and scaffold pre-assembled contigs using one or more mate pairs or paired-end libraries, or even a combination. . SSPACE is built based on SSAKE. Code of SSAKE is changed to be able to extend and scaffold pre-assembled contigs for multiple paired reads libraries. . This is the free 'basic' version of SSPACE. The non-free 'standard' version is available directly from Baseclear.
Homepage: https://github.com/nsoranzo/sspace_basic
Version: 2.1.1+dfsg-3
Section: universe/science