Install srst2 by entering the following commands in the terminal:
sudo apt update sudo apt install srst2
Description:
Short Read Sequence Typing for Bacterial Pathogens
This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.
Homepage: https://katholt.github.io/srst2/
Version: 0.2.0-5
Section: universe/science