Install spades by entering the following commands in the terminal:
sudo apt update sudo apt install spades
Description:
genome assembler for single-cell and isolates data sets
The SPAdes – St. Petersburg genome assembler is intended for both standard isolates and single-cell MDA bacteria assemblies. It works with Illumina or IonTorrent reads and is capable of providing hybrid assemblies using PacBio and Sanger reads. You can also provide additional contigs that will be used as long reads.
Homepage: http://cab.spbu.ru/software/spades/
Version: 3.11.1+dfsg-1
Section: universe/science