Install seqtk by entering the following commands in the terminal:
sudo apt update sudo apt install seqtk
Description:
Fast and lightweight tool for processing sequences in the FASTA or FASTQ format
Currently, seqtk supports quality based trimming with the phred algorithm, converting fastq to fasta, reverse complementing sequences, extracting or masking subsequences in regions given in a BED/name list file, and more. It contains a subsampling module to sample exactly n sequences or a fraction of sequences. . Seqtk supports both fasta and fastq input files, which can be optionally gzip compressed.
Homepage: https://github.com/lh3/seqtk
Version: 1.2-2
Section: universe/science