Install plip by entering the following commands in the terminal:
sudo apt update sudo apt install plip
Description:
fully automated protein-ligand interaction profiler
The Protein-Ligand Interaction Profiler (PLIP) is a tool to analyze and visualize protein-ligand interactions in PDB files. . Features include: * Detection of eight different types of noncovalent interactions * Automatic detection of relevant ligands in a PDB file * Direct download of PDB structures from wwPDB server if valid PDB ID is given * Processing of custom PDB files containing protein-ligand complexes (e.g. from docking) * No need for special preparation of a PDB file, works out of the box * Atom-level interaction reports in rST and XML formats for easy parsing * Generation of PyMOL session files (.pse) for each pairing, enabling easy preparation of images for publications and talks * Rendering of preview image for each ligand and its interactions with the protein
Homepage: https://projects.biotec.tu-dresden.de/plip-web/plip/
Version: 1.3.5+dfsg-1
Section: universe/python