Install libssw0 by entering the following commands in the terminal:
sudo apt update sudo apt install libssw0
Description:
fast SIMD parallelized implementation of the Smith-Waterman algorithm
SSW is a fast implementation of the Smith-Waterman algorithm, which uses the Single-Instruction Multiple-Data (SIMD) instructions to parallelize the algorithm at the instruction level. SSW library provides an API that can be flexibly used by programs written in C, C++ and other languages. The library can do protein and genome alignment directly. Current version of this implementation is ~50 times faster than an ordinary Smith-Waterman. It can return the Smith-Waterman score, alignment location and traceback path (cigar) of the optimal alignment accurately; and return the sub-optimal alignment score and location heuristically.
Homepage: https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library
Version: 1.1-1
Section: universe/libs