Install king-probe by entering the following commands in the terminal:
sudo apt update sudo apt install king-probe
Description:
Evaluate and visualize protein interatomic packing
king-probe is a program that allows one to evaluate atomic packing, either within or between molecules. It generates "contact dots" where atoms are in close contact. . The program king-probe generates "contact dots" at points on the van der Waals surface of atoms which are in close proximity to other atoms; reading atomic coordinates in protein databank (PDB) format files and writing color-coded dot lists (spikes where atoms clash) for inclusion in a kinemage.
Homepage: http://kinemage.biochem.duke.edu/software/probe.php
Version: 2.13.110909-2
Section: universe/science