Install jaligner by entering the following commands in the terminal:
sudo apt update sudo apt install jaligner
Description:
Smith-Waterman algorithm with Gotoh's improvement
JAligner is an open source Java implementation of the Smith-Waterman algorithm with Gotoh's improvement for biological local pairwise sequence alignment with the affine gap penalty model.
Homepage: https://github.com/ahmedmoustafa/JAligner
Version: 1.0+dfsg-4
Section: universe/science