Install fastqc by entering the following commands in the terminal:
sudo apt update sudo apt install fastqc
Description:
quality control for high throughput sequence data
FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis. . The main functions of FastQC are * Import of data from BAM, SAM or FastQ files (any variant) * Providing a quick overview to tell you in which areas there may be problems * Summary graphs and tables to quickly assess your data * Export of results to an HTML based permanent report * Offline operation to allow automated generation of reports without running the interactive application
Homepage: http://www.bioinformatics.babraham.ac.uk/projects/fastqc/
Version: 0.11.5+dfsg-6
Section: universe/science