Install discosnp by entering the following commands in the terminal:
sudo apt update sudo apt install discosnp
Description:
discovering Single Nucleotide Polymorphism from raw set(s) of reads
Software discoSnp is designed for discovering Single Nucleotide Polymorphism (SNP) from raw set(s) of reads obtained with Next Generation Sequencers (NGS). . Note that number of input read sets is not constrained, it can be one, two, or more. Note also that no other data as reference genome or annotations are needed. . The software is composed by two modules. First module, kissnp2, detects SNPs from read sets. A second module, kissreads, enhance the kissnp2 results by computing per read set and for each found SNP: . 1) its mean read coverage 2) the (phred) quality of reads generating the polymorphism. . This program is superseded by DiscoSnp++.
Homepage: http://colibread.inria.fr/discosnp/
Version: 1.2.6-2
Section: universe/science