Install cufflinks by entering the following commands in the terminal:
sudo apt update sudo apt install cufflinks
Description:
Transcript assembly, differential expression and regulation for RNA-Seq
Cufflinks assembles transcripts, estimates their abundances, and tests for differential expression and regulation in RNA-Seq samples. It accepts aligned RNA-Seq reads and assembles the alignments into a parsimonious set of transcripts. Cufflinks then estimates the relative abundances of these transcripts based on how many reads support each one.
Homepage: http://cufflinks.cbcb.umd.edu
Version: 2.2.1+dfsg.1-2
Section: multiverse/science