Install cd-hit by entering the following commands in the terminal:
sudo apt update sudo apt install cd-hit
Description:
suite of programs designed to quickly group sequences
cd-hit contains a number of programs designed to quickly group sequences. cd-hit groups proteins into clusters that meet a user-defined similarity threshold. cd-hit-est is similar to cd-hit, but designed to group nucleotide sequences (without introns). cd-hit-est-2d is similar to cd-hit-2d but designed to compare two nucleotide datasets. A number of other related programs are also in this package. Please see the cd-hit user manual, also part of this package, for further information.
Homepage: http://weizhong-lab.ucsd.edu/cd-hit/
Version: 4.6.8-1
Section: universe/science