Install beagle by entering the following commands in the terminal:
sudo apt update sudo apt install beagle
Description:
Genotype calling, genotype phasing and imputation of ungenotyped markers
Beagle performs genotype calling, genotype phasing, imputation of ungenotyped markers, and identity-by-descent segment detection. Genotypic imputation works on phased haplotypes using a Li and Stephens haplotype frequency model. Beagle also implements the Refined IBD algorithm for detecting homozygosity-by-descent (HBD) and identity-by-descent (IBD) segments.
Homepage: https://faculty.washington.edu/browning/beagle/beagle.html
Version: 4.1~180127+dfsg-1
Section: universe/science